wwPDB entry 6cdi

 Summary
Title: Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Description: VRC03 Heavy Chain, VRC03 light chain, PGT122 Heavy Chain, PGT122 Light Chain, Glycoprotein 120, Glycoprotein gp41, vFP16.02 Heavy Chain, vFP16.02 Light Chain
Keywords: HIV-1 Env, BG505 SOSIP, fusion peptide, VRC03, PGT122, vFP16.02, VIRAL PROTEIN
Source: Human immunodeficiency virus 1, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2018-05-16
 Protein Entities: 8
 Non-Protein Entities: 3
 Glycan structures: 9
Structure entry #229: N-Glycan fragment GlcNAc1 [6 instances]
b-D-GlcpNAc-(1-4)-Asn
1H: 1 : 4976  : 15  Taxons: 3

Structure entry #551: N-Glycan fragment GlcNAc2Man1 [9 instances]
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
: 951  : 11  Taxons: 3

Structure entry #1516 [9 instances]
a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
: 384  : 2  Taxons

Structure entry #548: N-Glycan fragment GlcNAc2 [15 instances]
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
: 2694  : 5  Taxons: 1

Structure entry #1517: N-Glycan core structure linked to Asn [6 instances]
a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn | a-D-Manp-(1-3)+
1H: 1 : 398  : 36  Taxons: 5

Structure entry #12644: Man-6 N-glycan M6BC2 linked to Asn [3 instances]
a-D-Manp-(1-3)-a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn | a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)+
: 22  : 2  Taxons

Structure entry #231: M2 N-glycan linked to Asn [3 instances]
a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
1H: 1 : 152  : 19  Taxons: 2

Structure entry #16145 [3 instances]
a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn | a-D-Manp-(1-2)-a-D-Manp-(1-3)+
: 60  : 2  Taxons: 2

Structure entry #7255: Man-7 N-Glycan M7BC linked to Asn [3 instances]
a-D-Manp-(1-6)+ | a-D-Manp-(1-6)+ | | a-D-Manp-(1-3)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn | a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)+
1H: 1 : 46  : 9  Taxons: 6
© 2017-2019 The Glycosciences.de crew
© 2010-2016 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.