wwPDB entry 7mxe
Title: Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab
Keywords: VIRAL PROTEIN-IMMUNE SYSTEM complex, non-neutralizing, ANTIVIRAL PROTEIN, ANTIVIRAL PROTEIN-VIRAL PROTEIN complex
Source: HOMO SAPIENS, Human immunodeficiency virus 1, Macaca mulatta
Experimental method: ELECTRON MICROSCOPY
Release date: 2021-10-27
Entity 1: 8ANC195 G52K5 Fab heavy chain
Strand: A,H,M
Type: polymer
Polymer type: polypeptide(L)
Source: HOMO SAPIENS (Taxonomy ID:
9606)
Expression system: HOMO SAPIENS
Entity 2: 8ANC195 G52K5 Fab light chain
Strand: B,L,O
Type: polymer
Polymer type: polypeptide(L)
Source: HOMO SAPIENS (Taxonomy ID:
9606)
Expression system: HOMO SAPIENS
Entity 3: HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41
Strand: C,D,F
Type: polymer
Polymer type: polypeptide(L)
Source: Human immunodeficiency virus 1 (Taxonomy ID:
11676)
Expression system: Cricetulus griseus
Source gene: env
Entity 4: Envelope glycoprotein BG505 SOSIP.664 gp120
Strand: G,J,P
Type: polymer
Polymer type: polypeptide(L)
Synonyms: Env polyprotein
Source: Human immunodeficiency virus 1 (Taxonomy ID:
11676)
Expression system: Cricetulus griseus
Source gene: env
Entity 5: Ab1245 Fab heavy chain
Strand: R
Type: polymer
Polymer type: polypeptide(L)
Source: Macaca mulatta (Taxonomy ID:
9544)
Expression system: Homo sapiens
Entity 6: Ab1245 Fab light chain
Strand: W
Type: polymer
Polymer type: polypeptide(L)
Source: Macaca mulatta (Taxonomy ID:
9544)
Expression system: Homo sapiens
Entity 10: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-
Type: branched
Entity 11: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 12: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glu
Type: branched
Entity 13: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 14: 2-acetamido-2-deoxy-beta-D-glucopyranose
Type: non-polymer
Entity 7: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 8: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Entity 9: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Type: branched
Structure entry #548: N-Glycan fragment GlcNAc2 [21 instances]
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #1516 [1 instances]
a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #16145 [1 instances]
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)+
Structure entry #298: Man-9 N-glycan linked to Asn [1 instances]
a-D-Manp-(1-2)-a-D-Manp-(1-6)+
|
a-D-Manp-(1-6)+
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)+
Structure entry #1517: N-Glycan core structure linked to Asn [2 instances]
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-3)+
Structure entry #1262: Man-8 N-Glycan M8B linked to Asn [2 instances]
a-D-Manp-(1-2)-a-D-Manp-(1-6)+
|
a-D-Manp-(1-6)+
| |
a-D-Manp-(1-3)+ b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)+
Structure entry #551: N-Glycan fragment GlcNAc2Man1 [4 instances]
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
Structure entry #229: N-Glycan fragment GlcNAc1 [23 instances]
b-D-GlcpNAc-(1-4)-Asn
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