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Glycosciences.DB structure entry #7709:
a-L-Fucp-(1-6)+
|
b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-4)-Asn
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{}[(6+1)][A-D-MANP]{[(2+1)][B-D-GLCPNAC]{}}}}[(6+1)][A-L-FUCP]{}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="8" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="9" name="n-acetyl" />
<basetype id="10" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="5" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="7" child="8">
<linkage id="7" parentType="o" childType="d">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="8" parent="8" child="9">
<linkage id="8" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="9" parent="1" child="10">
<linkage id="9" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>

1 - 3 of 3 entries with matching glycan part

b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+ a-L-Fucp-(1-6)+
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b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
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a-D-Manp-(1-3)+
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Taxons |

a-L-Fucp-(1-6)+
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a-D-Manp-(1-6/3)+ b-D-GlcpNAc
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
b-D-GlcpNAc-(1-2)-a-D-Manp-(1-3/6)+
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Taxons |

a-L-Fucp-(1-6)+
|
b-D-GlcpNAc-(1-2)-a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-1)-<Azide>
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
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Taxons |
- N-glycan core (Show) (Search Database)
Chemical Formula: | C52H87N5O36 | #C | #H | #O | #N | |
Molec. Weight: | 1358 | 52 | 87 | 36 | 5 | |
# Atoms: | 180 | |||||
# Residues: | 8 | |||||
# Heavy Atoms: | 93 |
Superclasses:
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Residues:
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1 - 5 of 18 PDB entries

PDB ID 8a48:
Less crystallisable" IgG1 Fc fragment (E382S variant)
Description:
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3.044Å
Release date: 2022-11-30
Entry features 2 distinct glycan structures [2 instances].

PDB ID 7oih:
Glycosylation in the crystal structure of neutrophil myeloperoxidase
Description:
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.603Å
Release date: 2022-08-24
Entry features 13 distinct glycan structures [30 instances].

PDB ID 7q4d:
Local refinement structure of the two interacting N-domains of full-length, dimeric, soluble somatic angiotensin I-converting enzyme
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-20
Entry features 6 distinct glycan structures [16 instances].

PDB ID 7q4e:
Local refinement structure of a single N-domain of full-length, dimeric, soluble somatic angiotensin I-converting enzyme
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-07-20
Entry features 6 distinct glycan structures [8 instances].

PDB ID 6ugx:
Crystal structure of the Fc fragment of PF06438179/GP1111 an infliximab biosimilar in a primative orthorhombic crystal form, Lot A
Description: PF-06438179/GP1111 Fc
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.1Å
Release date: 2019-11-13
Entry features 2 distinct glycan structures [2 instances].
1 - 5 of 5 literature references

Reference #20862
Loke I; Østergaard O; Heegaard NHH; Packer NH; Thaysen-Andersen M
Paucimannose-Rich N-glycosylation of Spatiotemporally Regulated Human Neutrophil Elastase Modulates Its Immune Functions.
Published 2017 in Mol. Cell Proteomics, 16: 1507-1527
Reference contains 8 structures

Reference #3928
Narasimhan S; Freed JC; Schachter H
The effect of a 'bisecting' N-acetylglucosaminyl group on the binding of biantennary, complex oligosaccharides to concanavalin A, Phaseolus vulgaris erythroagglutinin (E-PHA), and Ricinus communis agglutinin (RCA-120) immobilized on agarose
Published 1986 in Carbohydr Res, 149: 65-83
Reference contains 31 structures

Reference #11077
Quill H; Schwartz BD
Comparison and partial characterization of guinea pig Ia .alpha.-and .beta.-chain oligosaccharides
Published 1984 in J Immunol, 132: 289-296
Reference contains 6 structures

Reference #9374
Kornfeld K; Reitman ML; Kornfeld R
The carbohydrate-binding specificity of pea and lentil lectins. Fucose is an important determinant
Published 1981 in J Biol Chem, 256: 6633-6640
Reference contains 9 structures

Reference #9298
Baenziger JU; Fiete D
Structural determinants of concanavalin A specificity for oligosaccharides
Published 1979 in J Biol Chem, 254: 2400-2407
Reference contains 33 structures
1 - 5 of 13 literature references from PDB entries

Reference #21254
Darowski D; Jost C; Stubenrauch K; Wessels U; Benz J; Ehler A; Freimoser-Grundschober A; Brünker P; Mössner E; Umaña P; Kobold S; Klein C
P329G-CAR-J: a novel Jurkat-NFAT-based CAR-T reporter system recognizing the P329G Fc mutation.
Published 2019 in Protein Eng. Des. Sel., :

Reference #21290
Lerch TF; Sharpe P; Mayclin SJ; Edwards TE; Polleck S; Rouse JC; Zou Q; Conlon HD
Crystal Structures of PF-06438179/GP1111, an Infliximab Biosimilar.
Published 2019 in BioDrugs, :

Reference #21031
Blech M; Hörer S; Kuhn AB; Kube S; Göddeke H; Kiefer H; Zang Y; Alber Y; Kast SM; Westermann M; Tully MD; Schäfer LV; Garidel P
Structure of a Therapeutic Full-Length Anti-NPRA IgG4 Antibody: Dissecting Conformational Diversity.
Published 2019 in Biophys. J., 116: 1637-1649

Reference #20539
Kanje S; Venskutonytė R; Scheffel J; Nilvebrant J; Lindkvist-Petersson K; Hober S
Protein engineering allows for mild affinity-based elution of therapeutic antibodies.
Published 2018 in J. Mol. Biol., :

Reference #20670
Sadowsky J; Vance N; Zacharias N; Ultsch M; Li G; Fourie A; Liu P; Lafrance-Vanasse J; Ernst JA; Sandoval W; Kozak KR; Lewis-Phillips GD; Wang W
Development, optimization and structural characterization of an efficient peptide-based photoaffinity crosslinking reaction for generation of homogeneous conjugates from wild-type antibodies.
Published 2018 in Bioconjug. Chem., :
NCBI Taxonomy ID | Scientific Name |
10141 | Cavia porcellus |
Consortium for Functional Glycomics (CFG):
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