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Glycosciences.DB structure entry #556: O-GlcNAc linked to Ser
b-D-GlcpNAc-(1-3)-Ser
[][SER]{[(3+1)][B-D-GLCPNAC]{}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="SER" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="3" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 5 of 48 entries with matching glycan part
Structure entry #229: N-Glycan fragment GlcNAc1
b-D-GlcpNAc-(1-4)-Asn
 |
 1H: 1 |
 : 7226 |
 : 16 |
 |
Taxons: 3 |
Structure entry #588:
b-D-GlcpNAc-(1-3)+
|
Ser-(1-2)-Ala
|
Gly-(1-2)+
 |
 |
 |
: 1 |
|
Taxons |
Structure entry #594:
b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Gly-(1-2)-Ser-(1-2)-Met-(1-2)-Ser-(1-2)-Gly
|
Thr-(1-2)-His-(1-2)-Ala-(1-2)-Ser-(1-2)+
|
|
|
: 1 |
|
Taxons |
Structure entry #595:
b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Lys-(1-2)-Thr-(1-2)-Leu-(1-2)-Met
|
Gly-(1-2)-Lys-(1-2)-Ala-(1-2)-Tyr-(1-2)-Thr-(1-2)-Ile-(1-2)-Phe-(1-2)+
|
|
|
: 1 |
|
Taxons |
Structure entry #2038:
b-D-GlcpNAc-(1-1)-<linker-TMR>
|
|
|
: 1 |
|
Taxons |
- O-GlcNAc
| Chemical Formula: | C11H20N2O7 | #C | #H | #O | #N | |
| Molec. Weight: | 292 | 11 | 20 | 7 | 2 | |
| # Atoms: | 40 | |||||
| # Residues: | 2 | |||||
| # Heavy Atoms: | 20 | |||||
Superclasses:
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Residues:
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PDB references: 271 - 5 of 27 PDB entries
PDB ID 7wgb:
Neutral Omicron Spike Trimer in complex with ACE2
Description:
Source: Severe acute respiratory syndrome coronavirus 2, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-06-22
Entry features 4 distinct glycan structures [41 instances].
PDB ID 7ec3:
Crystal structure of SdgB (complexed with UDP, GlcNAc, and Glycosylated peptide)
Description:
Source: Staphylococcus aureus (strain USA300)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5Å
Release date: 2022-03-16
Entry features 2 distinct glycan structures [5 instances].
PDB ID 6byj:
Structure of human 14-3-3 gamma bound to O-GlcNAc peptide
Description: 14-3-3 protein gamma, TSTTATPPVSQASSTTTSTW O-GlcNac peptide
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9Å
Release date: 2018-05-09
Entry features 1 distinct glycan structures [3 instances].
PDB ID 6byk:
Structure of 14-3-3 beta/alpha bound to O-ClcNAc peptide
Description: 14-3-3 protein beta/alpha, ATPPVSQASSTT O-GlcNac peptide
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 3Å
Release date: 2018-05-09
Entry features 1 distinct glycan structures [4 instances].
PDB ID 6bzd:
Structure of 14-3-3 gamma R57E mutant bound to GlcNAcylated peptide
Description: 14-3-3 protein gamma, GlcNAcylated peptide
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.67Å
Release date: 2018-05-09
Entry features 1 distinct glycan structures [2 instances].
Literature references: 671 - 5 of 67 literature references
Reference #21911
Chen YF; Zhu JJ; Li J; Ye XS
O-GlcNAcylation increases PYGL activity by promoting phosphorylation.
Published 2022 in Glycobiology, 32: 101-109
Reference contains 1 structure
Reference #21990
Zhao Y; Yue S; Zhou X; Guo J; Ma S; Chen Q
O-GlcNAc transferase promotes the nuclear localization of the focal adhesion-associated protein Zyxin to regulate UV-induced cell death.
Published 2022 in J Biol Chem, 298: 101776
Reference contains 1 structure
Reference #21958
Schwein PA; Ge Y; Yang B; D'Souza A; Mody A; Shen D; Woo CM
Writing and Erasing O-GlcNAc on Casein Kinase 2 Alpha Alters the Phosphoproteome.
Published 2022 in ACS Chem Biol, : Online ahead of print
Reference contains 2 structures
Reference #22021
Lv P; Du Y; He C; Peng L; Zhou X; Wan Y; Zeng M; Zhou W; Zou P; Li C; Zhang M; Dong S; Chen X
O-GlcNAcylation modulates liquid-liquid phase separation of SynGAP/PSD-95.
Published 2022 in Nat Chem, :
Reference contains 2 structures
Reference #21890
King DT; Serrano-Negrón JE; Zhu Y; Moore CL; Shoulders MD; Foster LJ; Vocadlo DJ
Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.
Published 2022 in J Am Chem Soc, : epub ahead of print
Reference contains 2 structures
1 - 5 of 14 literature references from PDB entries
Reference #22040
Cui Z; Liu P; Wang N; Wang L; Fan K; Zhu Q; Wang K; Chen R; Feng R; Jia Z; Yang M; Xu G; Zhu B; Fu W; Chu T; Feng L; Wang Y; Pei X; Yang P; Xie XS; Cao L; Cao Y; Wang X
Structural and functional characterizations of infectivity and immune evasion of SARS-CoV-2 Omicron.
Published 2022 in Cell, 185: 860-871.e13
Reference #20278
Rafie K; Raimi O; Ferenbach AT; Borodkin VS; Kapuria V; van Aalten DMF
Recognition of a glycosylation substrate by the O-GlcNAc transferase TPR repeats.
Published 2017 in Open Biol, 7:
Reference #20071
Janetzko J; Trauger SA; Lazarus MB; Walker S
How the glycosyltransferase OGT catalyzes amide bond cleavage.
Published 2016 in Nat. Chem. Biol., 12: 899-901
Reference #19367
Ostrowski A; Gundogdu M; Ferenbach AT; Lebedev AA; van Aalten DM
Evidence for a Functional O-Linked N-Acetylglucosamine (O-GlcNAc) System in the Thermophilic Bacterium Thermobaculum terrenum.
Published 2015 in J. Biol. Chem., 290: 30291-305
Reference #18113
Schimpl M; Borodkin VS; Gray LJ; van Aalten DM
Synergy of peptide and sugar in O-GlcNAcase substrate recognition.
Published 2012 in Chem. Biol., 19: 173-8
| NCBI Taxonomy ID | Scientific Name |
| 9606 | Homo sapiens |
| 1639 | Listeria monocytogenes |
| 40674 | Mammalia |
| 1302 | Streptococcus gordonii |
Consortium for Functional Glycomics (CFG):
GlycoEpitope DB:
GlycoEpitope DB:
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