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Glycosciences.DB structure entry #551: N-Glycan fragment GlcNAc2Man1
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 5 of 8 entries with matching glycan part
Structure entry #3409:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(2-1)-Acetate
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 : 1 |
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Taxons |
Structure entry #3821:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
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 : 2 |
: 7 |
 : 6 |
Taxons: 1 |
Structure entry #5704:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one>
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: 1 |
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Taxons |
Structure entry #13373:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)+
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Asn-(1-2)-Tyr-(1-2)-Thr
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octanoate-(1-2)+
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: 2 |
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Taxons: 1 |
Structure entry #13729:
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-O)-dolichol-PP
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: 3 |
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Taxons: 1 |
| Chemical Formula: | C26H44N4O17 | #C | #H | #O | #N | |
| Molec. Weight: | 684 | 26 | 44 | 17 | 4 | |
| # Atoms: | 91 | |||||
| # Residues: | 4 | |||||
| # Heavy Atoms: | 47 | |||||
Superclasses:
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Residues:
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PDB references: 14221 - 5 of 1422 PDB entries
PDB ID 7xwa:
Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron BA.4/5 variant spike protein in complex with its receptor ACE2
Description:
Source: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Experimental method: X-RAY DIFFRACTION
Resolution: 3.36Å
Release date: 2022-09-28
Entry features 5 distinct glycan structures [11 instances].
PDB ID 7qng:
Structure of a MHC I-Tapasin-ERp57 complex
Description:
Source: Homo sapiens, Mus musculus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7Å
Release date: 2022-09-28
Entry features 1 distinct glycan structures [1 instances].
PDB ID 7sch:
Cryo-EM structure of the human Exostosin-1 and Exostosin-2 heterodimer
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-09-28
Entry features 1 distinct glycan structures [1 instances].
PDB ID 7scj:
Cryo-EM structure of the human Exostosin-1 and Exostosin-2 heterodimer in complex with a 4-sugar oligosaccharide acceptor analog
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-09-28
Entry features 3 distinct glycan structures [3 instances].
PDB ID 7sck:
Cryo-EM structure of the human Exostosin-1 and Exostosin-2 heterodimer in complex with a 7-sugar oligosaccharide acceptor analog
Description:
Source: Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-09-28
Entry features 3 distinct glycan structures [3 instances].
Literature references: 121 - 5 of 12 literature references
Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures
Reference #100
Garg HG; Von dem Bruch K; Kunz H
Developments in the synthesis of glycopeptides containing glycosyl L-asparagine, L-serine, and L-threonine
Published 1994 in Adv Carbohydr Chem Biochem, 50: 277-310
Reference contains 59 structures
Reference #9863
Trimble RB; Tarentino AL
Identification of distinct endoglycosidase (endo) activities in Flavobacterium meningosepticum: endo F1, endo F2, and endo F3. Endo F1 and endo H hydrolyze only high mannose and hybrid glycans
Published 1991 in J Biol Chem, 266: 1646-1651
Reference contains 19 structures
Reference #642
Guenther W; Kunz H
Synthesis of a .beta.-mannosyl-chitobiosyl-asparagine conjugate- a central core region unit of the N-glycoproteins
Published 1990 in Angew Chem Int Ed, 29: 1050-1051
Reference contains 1 structure
Reference #436
Maley F; Trimble RB; Tarentino AL; Plummer TH
Characterization of glycoproteins and their associated oligosaccharides through the use of endoglycosidases
Published 1989 in Anal Biochem, 180: 195-204
Reference contains 16 structures
1 - 5 of 598 literature references from PDB entries
Reference #21929
Gao N; Gai Y; Meng L; Wang C; Wang W; Li X; Gu T; Louder MK; Doria-Rose NA; Wiehe K; Nazzari AF; Olia AS; Gorman J; Rawi R; Wu W; Smith C; Khant H; de Val N; Yu B; Luo J; Niu H; Tsybovsky Y; Liao H; Kepler TB; Kwong PD; Mascola JR; Qin C; Zhou T; Yu X; G
Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2.
Published 2022 in Adv Sci (Weinh), : e2200063
Reference #22422
Wang A; Zhou F; Liu C; Gao D; Qi R; Yin Y; Liu S; Gao Y; Fu L; Xia Y; Xu Y; Wang C; Liu Z
Structure of infective Getah virus at 2.8 Å resolution determined by cryo-electron microscopy.
Published 2022 in Cell Discov, 8: 12
Reference #22305
Feng B; Chen Z; Sun J; Xu T; Wang Q; Yi H; Niu X; Zhu J; Fan M; Hou R; Shao Y; Huang S; Li C; Hu P; Zheng P; He P; Luo J; Yan Q; Xiong X; Liu J; Zhao J; Chen L
A Class of Shark-Derived Single-Domain Antibodies can Broadly Neutralize SARS-Related Coronaviruses and the Structural Basis of Neutralization and Omicron Escape.
Published 2022 in Small Methods, : e2200387
Reference #21941
Cao L; Coventry B; Goreshnik I; Huang B; Park JS; Jude KM; Marković I; Kadam RU; Verschueren KHG; Verstraete K; Walsh STR; Bennett N; Phal A; Yang A; Kozodoy L; DeWitt M; Picton L; Miller L; Strauch EM; DeBouver ND; Pires A; Bera AK; Halabiya S; Hammers
Design of protein binding proteins from target structure alone.
Published 2022 in Nature, :
Reference #21982
Hodder AN; Christensen J; Scally S; Triglia T; Ngo A; Birkinshaw RW; Bailey B; Favuzza P; Dietrich MH; Tham WH; Czabotar PE; Lowes K; Guo Z; Murgolo N; Lera Ruiz M; McCauley JA; Sleebs BE; Olsen D; Cowman AF
Basis for drug selectivity of plasmepsin IX and X inhibition in Plasmodium falciparum and vivax.
Published 2022 in Structure, :
Consortium for Functional Glycomics (CFG):
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