Glycosciences.de - Glycosciences.DB entry 3099

☰
- Add title
- Add keywords
- Add publication
- Leave comment

Glycosciences.DB structure entry #3099:

■ Expand all ■ Collapse all

Format: CarbBank LINUCS GlycoCT_xml


 a-D-Manp-(1-3)-a-D-Manp-(1-6)+
                              |
                         b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
                              |
                a-D-Manp-(1-3)+


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="8" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="5" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="7" parent="7" child="8">
 <linkage id="7" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 <aglyca>
 <historicalData>
 <entry id="0" name="ASN" toResidue="1">
 <linkage parentType="n" childType="x">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </entry>
 </historicalData>
 </aglyca>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 2

1 - 2 of 2 entries with matching glycan part

Structure entry #22445:

a-d-Manp-(1-3)-a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc | a-D-Manp-(1-3)+

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #23249:

a-D-Manp-(1-3/6)-a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc | a-D-Manp-(1-3)+

no NMR spectra

literature references

no GlycoMaps

Taxons

N-glycan core (Show) (Search Database)

General Structure Data

Chemical Formula:	C₄₄H₇₄N₄O₃₂		#C	#H	#O	#N
Molec. Weight:	1170		44	74	32	4
# Atoms:	154
# Residues:	7
# Heavy Atoms:	80

Superclasses:

Hex
Hex	4
HexNAc	2

Residues:

Residue	Count
A-D-MANP	3
ASN	1
B-D-GLCPNAC	2
B-D-MANP	1

PDB references: 119

1 - 5 of 119 PDB entries

PDB ID 8bes: Structure of D188A-fructofuranosidase from Rhodotorula dairenensis in complex with fructose

Description:

Source: Rhodotorula dairenensis

Experimental method: X-RAY DIFFRACTION

Resolution: 1.86Å

Release date: 2022-12-28

Entry features 8 distinct glycan structures [53 instances].

PDB ID 7ol4: Mouse contactin-1 neurofascin-155 immunoglobulin domains adhesion complex

Description:

Source: Mus musculus

Experimental method: X-RAY DIFFRACTION

Resolution: 4.8Å

Release date: 2022-12-14

Entry features 10 distinct glycan structures [16 instances].

PDB ID 7oih: Glycosylation in the crystal structure of neutrophil myeloperoxidase

Description:

Source: Homo sapiens

Experimental method: X-RAY DIFFRACTION

Resolution: 2.603Å

Release date: 2022-08-24

Entry features 13 distinct glycan structures [30 instances].

PDB ID 7zvb: Crystal Structure of the mature form of the glutamic-class prolyl-endopeptidase neprosin at 2.35 A resolution.

Description:

Source: Nepenthes ventricosa x Nepenthes alata

Experimental method: X-RAY DIFFRACTION

Resolution: 2.35Å

Release date: 2022-08-10

Entry features 2 distinct glycan structures [2 instances].

PDB ID 7b7a: ENDO-POLYGALACTURONASE FROM ARABIDOPSIS THALIANA

Description:

Source: Arabidopsis thaliana

Experimental method: X-RAY DIFFRACTION

Resolution: 1.3Å

Release date: 2022-06-22

Entry features 2 distinct glycan structures [2 instances].

Literature references: 8

1 - 5 of 8 literature references

Reference #9960

Aleshin A; Golubev A; Firsov LM; Honzatko RB

Crystal structure of glucoamylase from Aspergillus awamori var. X100 to 2.2-A resolution

Published 1992 in J Biol Chem, 267: 19291-19298

Reference contains 2 structures

Reference #9682

Wellner RB; Ghosh PC; Roecklein B; Wu HC

Perturbation of N-linked oligosaccharide structure results in an altered incorporation of [3H]palmitate into specific proteins in Chinese hamster ovary cells

Published 1987 in J Biol Chem, 262: 13204-13211

Reference contains 2 structures

Reference #9568

Ohyama Y; Kasai K; Nomoto H; Inoue Y

Frontal affinity chromatography of ovalbumin glycoasparagines on a concanavalin A-Sepharose column. A quantitative study of the binding specificity of the lectin

Published 1985 in J Biol Chem, 260: 6882-6887

Reference contains 10 structures

Reference #2623

Carver JP; MacKenzie AE; Hardman KD

Molecular model for the complex between concanavalin A and a biantennary-complex class glycopeptide

Published 1985 in Biopolymers, 24: 49-63

Reference contains 4 structures

Reference #8694

Allerhand A; Berman E

Systematic approach to the analysis of carbon-13 NMR spectra of complex carbohydrates. 2. Application to the high mannose glycopeptides of hen ovalbumin

Published 1984 in J Am Chem Soc, 106: 2412-2420

Reference contains 7 structures

Further literature references from PDB entries: 50

1 - 5 of 50 literature references from PDB entries

Reference #21933

Sente A; Desai R; Naydenova K; Malinauskas T; Jounaidi Y; Miehling J; Zhou X; Masiulis S; Hardwick SW; Chirgadze DY; Miller KW; Aricescu AR

Differential assembly diversifies GABA receptor structures and signalling.

Published 2022 in Nature, 604: 190-194

Reference #22590

Chataigner LMP; Gogou C; den Boer MA; Frias CP; Thies-Weesie DME; Granneman JCM; Heck AJR; Meijer DH; Janssen BJC

Structural insights into the contactin 1 - neurofascin 155 adhesion complex.

Published 2022 in Nat Commun, 13: 6607

Reference #22436

Del Amo-Maestro L; Mendes SR; Rodríguez-Banqueri A; Garzon-Flores L; Girbal M; Rodríguez-Lagunas MJ; Guevara T; Franch À; Pérez-Cano FJ; Eckhard U; Gomis-Rüth FX

Molecular and in vivo studies of a glutamate-class prolyl-endopeptidase for coeliac disease therapy.

Published 2022 in Nat Commun, 13: 4446

Reference #22602

Jiménez-Ortega E; Narmontaite E; González-Pérez B; Plou FJ; Fernández-Lobato M; Sanz-Aparicio J

Insights into the Structure of the Highly Glycosylated Ffase from Enhance Its Biotechnological Potential.

Published 2022 in Int J Mol Sci, 23:

Reference #22349

Modenutti CP; Blanco Capurro JI; Ibba R; Alonzi DS; Song MN; Vasiljević S; Kumar A; Chandran AV; Tax G; Marti L; Hill JC; Lia A; Hensen M; Waksman T; Rushton J; Rubichi S; Santino A; Martí MA; Zitzmann N; Roversi P

Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase.

Published 2021 in Structure, 29: 357-370.e9

NCBI Taxonomy ID	Scientific Name
10029	Cricetulus griseus
9031	Gallus gallus

Consortium for Functional Glycomics (CFG):

carbNlink_21083_D000

■ Expand all ■ Collapse all

© 2010-2016,2022-2023 Justus-Liebig University Giessen, Institute of Veterinary Physiology and Biochemistry, Frankfurter Str. 100, 35392 Giessen, Germany
© 2017-2021 The Glycosciences.de crew
© 1997-2009 German Cancer Research Center Heidelberg, Central Spectroscopic Division, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
All rights reserved.