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Glycosciences.DB structure entry #3019:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


 b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp


RES
1b:b-dglc-HEX-1:5
2b:b-dglc-HEX-1:5
3b:b-dglc-HEX-1:5
4b:b-dglc-HEX-1:5
LIN
1:1o(4+1)2d
2:2o(4+1)3d
3:3o(4+1)4d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <basetype id="4" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="2" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

Corresponding entries: 4

1 - 4 of 4 entries with matching glycan part

Structure entry #6366:

b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-O)-<3,5-dimethylphenylcarbamate>

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #10006:

b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-1)-Methyl

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

Structure entry #11961:

b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-3)-<sitosterol>

no 3d model

no NMR spectra

literature references

no GlycoMaps

Structure entry #18964:

b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-1)-Acetate

no 3d model

no NMR spectra

literature references

no GlycoMaps

Taxons

General Structure Data

Chemical Formula:	C₂₄H₄₂O₂₁		#C	#H	#O
Molec. Weight:	666		24	42	21
# Atoms:	87
# Residues:	4
# Heavy Atoms:	45

Superclasses:

Hex
Hex	4

Residues:

Residue	Count
B-D-GLCP	4

PDB references: 43

1 - 5 of 43 PDB entries

PDB ID 6g1i: GH124 cellulase from Ruminiclostridium thermocellum in complex with Mn and fructosylated cellopentaose

Description: Dockerin type 1

Source: Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)

Experimental method: X-RAY DIFFRACTION

Resolution: 0.99Å

Release date: 2018-08-15

Entry features 2 distinct glycan structures [4 instances].

PDB ID 5gm4: Crystal structure of FI-CMCase from Aspergillus aculeatus F-50 in complex with cellotetrose

Description: Endoglucanase-1 (E.C.3.2.1.4)

Source: Aspergillus aculeatus

Experimental method: X-RAY DIFFRACTION

Resolution: 1.92Å

Release date: 2017-05-17

Entry features 1 distinct glycan structures [7 instances].

PDB ID 5gly: Crystal structure of a glycoside hydrolase in complex with cellotetrose from Thielavia terrestris NRRL 8126

Description: Glycoside hydrolase family 45 protein

Source: Thielavia terrestris NRRL 8126

Experimental method: X-RAY DIFFRACTION

Resolution: 1.58Å

Release date: 2017-04-19

Entry features 2 distinct glycan structures [2 instances].

PDB ID 5i79: Crystal structure of a beta-1,4-endoglucanase mutant from Aspergillus niger in complex with sugar

Description: Endo-beta-1, 4-glucanase

Source: Aspergillus niger

Experimental method: X-RAY DIFFRACTION

Resolution: 2.35Å

Release date: 2016-12-21

Entry features 2 distinct glycan structures [4 instances].

PDB ID 4yzt: Crystal structure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis complexed with cellotetraose

Description: ENDO-BETA-1,4-GLUCANASE (E.C.3.2.1.4)

Source: Bacillus licheniformis

Experimental method: X-RAY DIFFRACTION

Resolution: 1.665Å

Release date: 2016-09-07

Entry features 1 distinct glycan structures [1 instances].

Literature references: 4

1 - 4 of 4 literature references

Reference #20578

Urresti S; Cartmell A; Liu F; Walton PH; Davies GJ

Structural studies of the unusual metal-ion site of the GH124 endoglucanase from Ruminiclostridium thermocellum.

Published 2018 in Acta Crystallogr F Struct Biol Commun, 74: 496-505

Reference contains 3 structures

Reference #3691

Takeo K; Okushio K; Fukuyama K; Kuge T

Synthesis of cellobiose, cellotriose, cellotetraose, and lactose

Published 1983 in Carbohydr Res, 121: 163-173

Reference contains 4 structures

Reference #13882

Crystal structure of cellulose model compounds. .beta.-D-Cellotetraose

Published 1972 in TAPPI Spec Tech Ass Publ No 8, 0: 66-73

Reference contains 1 structure

Reference #1042

Spectra in the O-H stretching region of mono- and oligosaccharides at low temperatures

Published 1968 in Aust J Chem, 21: 1257-1266

Reference contains 2 structures

Further literature references from PDB entries: 28

1 - 5 of 28 literature references from PDB entries

Reference #20202

Gao J; Huang JW; Li Q; Liu W; Ko TP; Zheng Y; Xiao X; Kuo CJ; Chen CC; Guo RT

Characterization and crystal structure of a thermostable glycoside hydrolase family 45 1,4-β-endoglucanase from Thielavia terrestris.

Published 2017 in Enzyme Microb. Technol., 99: 32-37

Reference #20293

O'Neill EC; Pergolizzi G; Stevenson CEM; Lawson DM; Nepogodiev SA; Field RA

Cellodextrin phosphorylase from Ruminiclostridium thermocellum: X-ray crystal structure and substrate specificity analysis.

Published 2017 in Carbohydr. Res., :

Reference #20310

Meng DD; Liu X; Dong S; Wang YF; Ma XQ; Zhou H; Wang X; Yao LS; Feng Y; Li FL

Structural Insights into the Substrate Specificity of a Glycoside Hydrolase Family 5 Lichenase from Caldicellulosiruptor sp. F32.

Published 2017 in Biochem. J., :

Reference #20133

Yan J; Liu W; Li Y; Lai HL; Zheng Y; Huang JW; Chen CC; Chen Y; Jin J; Li H; Guo RT

Functional and structural analysis of Pichia pastoris-expressed Aspergillus niger 1,4-β-endoglucanase.

Published 2016 in Biochem. Biophys. Res. Commun., 475: 8-12

Reference #19373

McGregor N; Morar M; Fenger TH; Stogios P; Lenfant N; Yin V; Xu X; Evdokimova E; Cui H; Henrissat B; Savchenko A; Brumer H

Structure-Function Analysis of a Mixed-linkage β-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4.

Published 2016 in J. Biol. Chem., 291: 1175-97

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