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Glycosciences.DB structure entry #285:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GALP]{[(3+2)][A-D-NEUP5AC]{}}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
<stemtype id="1" type="dgal" />
</basetype>
<basetype id="4" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
<stemtype id="1" type="dgro" />
<stemtype id="2" type="dgal" />
<modification type="a" pos_one="1" />
<modification type="keto" pos_one="2" />
<modification type="d" pos_one="3" />
</basetype>
<substituent id="5" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="o" childType="d">
<parent pos="3" />
<child pos="2" />
</linkage>
</connection>
<connection id="4" parent="4" child="5">
<linkage id="4" parentType="d" childType="n">
<parent pos="5" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 5 of 13 entries with matching glycan part
Structure entry #523:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-1)-Methyl
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 : 5 |
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Taxons |
Structure entry #673: 3'-Sialyllactosamin
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc
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 : 46 |
: 19 |
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Taxons: 1 |
Structure entry #2281:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-1)-allyl
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: 3 |
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Taxons |
Structure entry #3243:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-1)-2-propenamide
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: 1 |
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Taxons |
Structure entry #4516:
a-D-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-1)-ethanolamine
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: 2 |
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Taxons |
- Lactosamine (Show) (Search Database)
| Chemical Formula: | C29H48N4O20 | #C | #H | #O | #N | |
| Molec. Weight: | 772 | 29 | 48 | 20 | 4 | |
| # Atoms: | 101 | |||||
| # Residues: | 4 | |||||
| # Heavy Atoms: | 53 | |||||
Superclasses:
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Residues:
|
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NMR Proton Chemical Shift Info| MHz | 500 | ||||||
| Temperature | 281 | ||||||
| Solvent | D2O | ||||||
| Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
| Asn | HA | 3.993 | a | b | 6.7 | ||
| Asn | HB | 2.879 | a | b' | 4.5 | ||
| Asn | HB' | 2.950 | b | b' | -17.2 | ||
| b-D-GlcpNAc | 4 | H1 | 5.107 | 1 | 2 | 9.7 | |
| b-D-GlcpNAc | 4 | H2 | 3.895 | 2 | 3 | 10.4 | |
| b-D-GlcpNAc | 4 | H3 | 3.764 | 3 | 4 | 9 | |
| b-D-GlcpNAc | 4 | H4 | 3.777 | 4 | 5 | 10 | |
| b-D-GlcpNAc | 4 | H5 | 3.661 | 5 | 6 | 2.3 | |
| b-D-GlcpNAc | 4 | H6 | 3.946 | 5 | 6' | 4.6 | |
| b-D-GlcpNAc | 4 | H6' | 3.863 | 6 | 6' | -12.4 | |
| b-D-GlcpNAc | 4 | NAC | 2.014 | 0 | |||
| b-D-Galp | 4,4 | H1 | 4.572 | 1 | 2 | 7.8 | |
| b-D-Galp | 4,4 | H2 | 3.582 | 2 | 3 | 9.9 | |
| b-D-Galp | 4,4 | H3 | 4.128 | 3 | 4 | 3.1 | |
| b-D-Galp | 4,4 | H4 | 3.957 | 4 | 5 | 1.5 | |
| b-D-Galp | 4,4 | H5 | 3.720 | 5 | 6 | 3.5 | |
| b-D-Galp | 4,4 | H6 | 3.730 | 5 | 6' | 8.5 | |
| b-D-Galp | 4,4 | H6' | 3.670 | 6 | 6' | -11.5 | |
| a-D-Neup5Ac | 3,4,4 | H3A | 1.801 | 3a | 3e | -12.8 | |
| a-D-Neup5Ac | 3,4,4 | H3E | 2.774 | 3a | 4 | 11.6 | |
| a-D-Neup5Ac | 3,4,4 | H4 | 3.684 | 3e | 4 | 4.6 | |
| a-D-Neup5Ac | 3,4,4 | H5 | 3.854 | 4 | 5 | 9.6 | |
| a-D-Neup5Ac | 3,4,4 | H6 | 3.618 | 5 | 6 | 10.5 | |
| a-D-Neup5Ac | 3,4,4 | H7 | 3.593 | 6 | 7 | 1.8 | |
| a-D-Neup5Ac | 3,4,4 | H8 | 3.903 | 7 | 8 | 9.2 | |
| a-D-Neup5Ac | 3,4,4 | H9 | 3.867 | 8 | 9 | 2.3 | |
| a-D-Neup5Ac | 3,4,4 | H9' | 3.633 | 8 | 9' | 6.7 | |
| a-D-Neup5Ac | 3,4,4 | NAC | 2.028 | 9 | 9' | -12.3 | |
PDB references: 11 - 1 of 1 PDB entries
PDB ID 4wrl:
Structure of the human CSF-1:CSF-1R complex
Description: human Colony Stimulating Factor-1 Receptor, human Colony Stimulating Factor-1
Source: Homo sapiens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.802Å
Release date: 2015-08-12
Entry features 3 distinct glycan structures [8 instances].
Literature references: 121 - 5 of 12 literature references
Reference #20487
Meuris L; Santens F; Elson G; Festjens N; Boone M; Dos Santos A; Devos S; Rousseau F; Plets E; Houthuys E; Malinge P; Magistrelli G; Cons L; Chatel L; Devreese B; Callewaert N
GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.
Published 2014 in Nat. Biotechnol., 32: 485-9
Reference contains 3 structures
Reference #7965
Irie F; Murakoshi H; Suzuki T; Suzuki Y; Kon K; Ando S; Yoshida K; Hirabayashi Y
Characterization of four monosialo and a novel disialo Asn N-glycosides from the urine of a patient with aspartylglycosaminuria
Published 1995 in Glycoconj J, 12: 290-297
Reference contains 5 structures
Reference #101
Hounsell EF
Physicochemical analyses of oligosaccharide determinants of glycoproteins
Published 1994 in Adv Carbohydr Chem Biochem, 50: 311-350
Reference contains 70 structures
Reference #4937
Machytka D; Klein RA; Egge H
Reporter resonances in the NMR spectra of oligosaccharides containing sialic acid linked to galactopyranose rings
Published 1994 in Carbohydr Res, 254: 289-294
Reference contains 20 structures
Reference #7098
Mononen I; Fisher KJ; Kaartinen V; Aronson NN
Aspartylglycosaminuria: protein chemistry and molecular biology of the most common lysosomal storage disorder of glycoprotein degradation
Published 1993 in FASEB J, 7: 1247-1256
Reference contains 5 structures
| NCBI Taxonomy ID | Scientific Name |
| 9606 | Homo sapiens |
Consortium for Functional Glycomics (CFG):
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