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Glycosciences.DB structure entry #229: N-Glycan fragment GlcNAc1
b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>

1 - 5 of 48 entries with matching glycan part

b-D-GlcpNAc-(1-3)-Ser
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Taxons: 4 |

b-D-GlcpNAc-(1-3)+
|
Ser-(1-2)-Ala
|
Gly-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Gly-(1-2)-Ser-(1-2)-Met-(1-2)-Ser-(1-2)-Gly
|
Thr-(1-2)-His-(1-2)-Ala-(1-2)-Ser-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Lys-(1-2)-Thr-(1-2)-Leu-(1-2)-Met
|
Gly-(1-2)-Lys-(1-2)-Ala-(1-2)-Tyr-(1-2)-Thr-(1-2)-Ile-(1-2)-Phe-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-1)-<linker-TMR>
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Taxons |
- N-GlcNAc
- ENGase product
Chemical Formula: | C12H21N3O7 | #C | #H | #O | #N | |
Molec. Weight: | 319 | 12 | 21 | 7 | 3 | |
# Atoms: | 43 | |||||
# Residues: | 2 | |||||
# Heavy Atoms: | 22 |
Superclasses:
|
Residues:
|
MHz | 360 | ||||||
Temperature | 300 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
Asn | HA | 3.968 | a | b | 6.9 | ||
Asn | HB | 2.866 | a | b' | 4 | ||
Asn | HB' | 2.932 | b | b' | -17.8 | ||
b-D-GlcpNAc | 4 | H1 | 5.072 | 1 | 2 | 9.8 | |
b-D-GlcpNAc | 4 | H2 | 3.821 | 2 | 3 | 10.6 | |
b-D-GlcpNAc | 4 | H3 | 3.601 | 3 | 4 | 9.1 | |
b-D-GlcpNAc | 4 | H4 | 3.472 | 4 | 5 | 10.4 | |
b-D-GlcpNAc | 4 | H5 | 3.527 | 5 | 6 | 2.4 | |
b-D-GlcpNAc | 4 | H6 | 3.876 | 5 | 6' | 5.55 | |
b-D-GlcpNAc | 4 | H6' | 3.739 | 6 | 6' | -12.7 | |
b-D-GlcpNAc | 4 | NAC | 2.013 | 0 |
1 - 5 of 7675 PDB entries

PDB ID 8hhx:
SARS-CoV-2 Delta Spike in complex with FP-12A
Description:
Source: Severe acute respiratory syndrome coronavirus 2, HOMO SAPIENS
Experimental method: ELECTRON MICROSCOPY
Release date: 2023-02-01
Entry features 2 distinct glycan structures [28 instances].

PDB ID 8hhy:
SARS-CoV-2 Delta Spike in complex with IS-9A
Description:
Source: HOMO SAPIENS, Severe acute respiratory syndrome coronavirus 2
Experimental method: ELECTRON MICROSCOPY
Release date: 2023-02-01
Entry features 2 distinct glycan structures [28 instances].

PDB ID 8dmk:
Cryo-EM reveals the molecular basis of laminin polymerization and LN-lamininopathies
Description:
Source: Homo sapiens, Mus musculus
Experimental method: ELECTRON MICROSCOPY
Release date: 2023-02-01
Entry features 1 distinct glycan structures [4 instances].

PDB ID 7ttz:
Heterodimeric IgA Fc in complex with Staphylococcus aureus protein SSL7
Description:
Source: Homo sapiens, STAPHYLOCOCCUS AUREUS
Experimental method: X-RAY DIFFRACTION
Resolution: 2.35Å
Release date: 2023-02-01
Entry features 1 distinct glycan structures [1 instances].

PDB ID 7wr9:
Local CryoEM structure of the SARS-CoV S2P in complex with BD55-3152 Fab
Description:
Source: HOMO SAPIENS, Severe acute respiratory syndrome coronavirus
Experimental method: ELECTRON MICROSCOPY
Release date: 2023-02-01
Entry features 2 distinct glycan structures [2 instances].
1 - 5 of 16 literature references

Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures

Reference #21197
Hobbs JK; Pluvinage B; Boraston AB
Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.
Published 2018 in FEBS Lett., 592: 3865-3897
Reference contains 47 structures

Reference #20772
Li C; Li T; Wang LX
Chemoenzymatic Defucosylation of Therapeutic Antibodies for Enhanced Effector Functions Using Bacterial α-Fucosidases.
Published 2018 in Methods Mol. Biol., 1827: 367-380
Reference contains 2 structures

Reference #20487
Meuris L; Santens F; Elson G; Festjens N; Boone M; Dos Santos A; Devos S; Rousseau F; Plets E; Houthuys E; Malinge P; Magistrelli G; Cons L; Chatel L; Devreese B; Callewaert N
GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.
Published 2014 in Nat. Biotechnol., 32: 485-9
Reference contains 3 structures

Reference #19000
Zouridakis M; Giastas P; Zarkadas E; Chroni-Tzartou D; Bregestovski P; Tzartos SJ
Crystal structures of free and antagonist-bound states of human α9 nicotinic receptor extracellular domain.
Published 2014 in Nat. Struct. Mol. Biol., 21: 976-80
Reference contains 1 structure
1 - 5 of 2512 literature references from PDB entries

Reference #22611
Tandrup T; Lo Leggio L; Meilleur F
Joint X-ray/neutron structure of Lentinus similis AA9_A at room temperature.
Published 2023 in Acta Crystallogr F Struct Biol Commun, 79: 1-7

Reference #22625
Troisi R; Galardo F; Ferraro G; Sica F; Merlino A
Cisplatin Binding to Human Serum Transferrin: A Crystallographic Study.
Published 2023 in Inorg Chem, 62: 675-678

Reference #22706
Meden A; Knez D; Brazzolotto X; Modeste F; Perdih A; Pišlar A; Zorman M; Zorović M; Denic M; Pajk S; Živin M; Nachon F; Gobec S
Pseudo-irreversible butyrylcholinesterase inhibitors: Structure-activity relationships, computational and crystallographic study of the N-dialkyl O-arylcarbamate warhead.
Published 2023 in Eur J Med Chem, 247: 115048

Reference #22684
Saville JW; Mannar D; Zhu X; Berezuk AM; Cholak S; Tuttle KS; Vahdatihassani F; Subramaniam S
Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein.
Published 2023 in Cell Rep, 42: 111964

Reference #22704
Ge Q; Teng M; Li X; Guo Q; Tao Y
An epitope-directed selection strategy facilitating the identification of Frizzled receptor selective antibodies.
Published 2023 in Structure, 31: 33-43.e5
NCBI Taxonomy ID | Scientific Name |
9606 | Homo sapiens |
12721 | Human immunodeficiency virus |
11309 | unidentified influenza virus |
Consortium for Functional Glycomics (CFG):
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