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Glycosciences.DB structure entry #229: N-Glycan fragment GlcNAc1
b-D-GlcpNAc-(1-4)-Asn
[][ASN]{[(4+1)][B-D-GLCPNAC]{}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>

1 - 5 of 48 entries with matching glycan part

b-D-GlcpNAc-(1-3)-Ser
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Taxons: 4 |

b-D-GlcpNAc-(1-3)+
|
Ser-(1-2)-Ala
|
Gly-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Gly-(1-2)-Ser-(1-2)-Met-(1-2)-Ser-(1-2)-Gly
|
Thr-(1-2)-His-(1-2)-Ala-(1-2)-Ser-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-4)+
|
Asn-(1-2)-Lys-(1-2)-Thr-(1-2)-Leu-(1-2)-Met
|
Gly-(1-2)-Lys-(1-2)-Ala-(1-2)-Tyr-(1-2)-Thr-(1-2)-Ile-(1-2)-Phe-(1-2)+
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Taxons |

b-D-GlcpNAc-(1-1)-<linker-TMR>
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Taxons |
- N-GlcNAc
- ENGase product
Chemical Formula: | C12H21N3O7 | #C | #H | #O | #N | |
Molec. Weight: | 319 | 12 | 21 | 7 | 3 | |
# Atoms: | 43 | |||||
# Residues: | 2 | |||||
# Heavy Atoms: | 22 |
Superclasses:
|
Residues:
|
MHz | 360 | ||||||
Temperature | 300 | ||||||
Solvent | D2O | ||||||
Residue | Linkage | Proton | PPM | JFrom | JTo | Hz | Note |
Asn | HA | 3.968 | a | b | 6.9 | ||
Asn | HB | 2.866 | a | b' | 4 | ||
Asn | HB' | 2.932 | b | b' | -17.8 | ||
b-D-GlcpNAc | 4 | H1 | 5.072 | 1 | 2 | 9.8 | |
b-D-GlcpNAc | 4 | H2 | 3.821 | 2 | 3 | 10.6 | |
b-D-GlcpNAc | 4 | H3 | 3.601 | 3 | 4 | 9.1 | |
b-D-GlcpNAc | 4 | H4 | 3.472 | 4 | 5 | 10.4 | |
b-D-GlcpNAc | 4 | H5 | 3.527 | 5 | 6 | 2.4 | |
b-D-GlcpNAc | 4 | H6 | 3.876 | 5 | 6' | 5.55 | |
b-D-GlcpNAc | 4 | H6' | 3.739 | 6 | 6' | -12.7 | |
b-D-GlcpNAc | 4 | NAC | 2.013 | 0 |
1 - 5 of 6680 PDB entries

PDB ID 7f5q:
An active enzyme from the plant Viola yedoensis
Description:
Source: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 2.3Å
Release date: 2022-06-29
Entry features 3 distinct glycan structures [6 instances].

PDB ID 7f6y:
Complex Structure of antibody BD-503 and RBD-E484K of COVID-19
Description:
Source: Severe acute respiratory syndrome coronavirus 2, HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 3Å
Release date: 2022-06-29
Entry features 1 distinct glycan structures [1 instances].

PDB ID 7y3u:
Crystal structure of the complex of Lactoperoxidase with Nitric oxide at 2.50A resolution
Description:
Source: Bos grunniens
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5Å
Release date: 2022-06-29
Entry features 2 distinct glycan structures [8 instances].

PDB ID 7zxu:
SARS-CoV-2 Omicron BA.4/5 RBD in complex with Beta-27 Fab and C1 nanobody
Description:
Source: Severe acute respiratory syndrome coronavirus 2, Lama glama, HOMO SAPIENS
Experimental method: X-RAY DIFFRACTION
Resolution: 1.89Å
Release date: 2022-06-29
Entry features 1 distinct glycan structures [1 instances].

PDB ID 7f5j:
a mutant of an enzyme from Viola yedoensis
Description:
Source: Viola philippica
Experimental method: X-RAY DIFFRACTION
Resolution: 1.593Å
Release date: 2022-06-29
Entry features 3 distinct glycan structures [6 instances].
1 - 5 of 16 literature references

Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures

Reference #21197
Hobbs JK; Pluvinage B; Boraston AB
Glycan-metabolizing enzymes in microbe-host interactions: the Streptococcus pneumoniae paradigm.
Published 2018 in FEBS Lett., 592: 3865-3897
Reference contains 47 structures

Reference #20772
Li C; Li T; Wang LX
Chemoenzymatic Defucosylation of Therapeutic Antibodies for Enhanced Effector Functions Using Bacterial α-Fucosidases.
Published 2018 in Methods Mol. Biol., 1827: 367-380
Reference contains 2 structures

Reference #19000
Zouridakis M; Giastas P; Zarkadas E; Chroni-Tzartou D; Bregestovski P; Tzartos SJ
Crystal structures of free and antagonist-bound states of human α9 nicotinic receptor extracellular domain.
Published 2014 in Nat. Struct. Mol. Biol., 21: 976-80
Reference contains 1 structure

Reference #20487
Meuris L; Santens F; Elson G; Festjens N; Boone M; Dos Santos A; Devos S; Rousseau F; Plets E; Houthuys E; Malinge P; Magistrelli G; Cons L; Chatel L; Devreese B; Callewaert N
GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.
Published 2014 in Nat. Biotechnol., 32: 485-9
Reference contains 3 structures
1 - 5 of 2198 literature references from PDB entries

Reference #22016
Chi X; Guo Y; Zhang G; Sun H; Zhang J; Li M; Chen Z; Han J; Zhang Y; Zhang X; Fan P; Zhang Z; Wang B; Zai X; Han X; Hao M; Fang T; Xu J; Wu S; Chen Y; Fang Y; Dong Y; Sun B; Zhang J; Li J; Zhao G; Yu C; Zhou Q; Chen W
Broadly neutralizing antibodies against Omicron-included SARS-CoV-2 variants induced by vaccination.
Published 2022 in Signal Transduct Target Ther, 7: 139

Reference #21929
Gao N; Gai Y; Meng L; Wang C; Wang W; Li X; Gu T; Louder MK; Doria-Rose NA; Wiehe K; Nazzari AF; Olia AS; Gorman J; Rawi R; Wu W; Smith C; Khant H; de Val N; Yu B; Luo J; Niu H; Tsybovsky Y; Liao H; Kepler TB; Kwong PD; Mascola JR; Qin C; Zhou T; Yu X; G
Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2.
Published 2022 in Adv Sci (Weinh), : e2200063

Reference #22025
Casasnovas JM; Margolles Y; Noriega MA; Guzmán M; Arranz R; Melero R; Casanova M; Corbera JA; Jiménez-de-Oya N; Gastaminza P; Garaigorta U; Saiz JC; Martín-Acebes MÁ; Fernández LÁ
Nanobodies Protecting From Lethal SARS-CoV-2 Infection Target Receptor Binding Epitopes Preserved in Virus Variants Other Than Omicron.
Published 2022 in Front Immunol, 13: 863831

Reference #21933
Sente A; Desai R; Naydenova K; Malinauskas T; Jounaidi Y; Miehling J; Zhou X; Masiulis S; Hardwick SW; Chirgadze DY; Miller KW; Aricescu AR
Differential assembly diversifies GABA receptor structures and signalling.
Published 2022 in Nature, 604: 190-194

Reference #21943
Ellis D; Lederhofer J; Acton OJ; Tsybovsky Y; Kephart S; Yap C; Gillespie RA; Creanga A; Olshefsky A; Stephens T; Pettie D; Murphy M; Sydeman C; Ahlrichs M; Chan S; Borst AJ; Park YJ; Lee KK; Graham BS; Veesler D; King NP; Kanekiyo M
Structure-based design of stabilized recombinant influenza neuraminidase tetramers.
Published 2022 in Nat Commun, 13: 1825
NCBI Taxonomy ID | Scientific Name |
9606 | Homo sapiens |
12721 | Human immunodeficiency virus |
11309 | unidentified influenza virus |
Consortium for Functional Glycomics (CFG):
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