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Glycosciences.DB structure entry #22811:
b-D-Glcp-(1-3)-b-D-Glcp
[][B-D-GLCP]{[(3+1)][B-D-GLCP]{}}
RES
1b:b-dglc-HEX-1:5
2b:b-dglc-HEX-1:5
LIN
1:1o(3+1)2d
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<basetype id="2" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
</linkages>
</sugar>
3D Structure Model1 - 5 of 21 entries with matching glycan part
Structure entry #5904:
b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-Ser
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 : 1 |
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Taxons |
Structure entry #5906:
b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-Ser-(1-2)-Ala
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: 1 |
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Taxons |
Structure entry #10322:
b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-<macrocliniside B::aglycon>
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: 2 |
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Taxons |
Structure entry #10361:
b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-<4-allyl-2,6-dimethoxyphenol>
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: 1 |
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Taxons |
Structure entry #11100:
a-L-Rhap-(1-3)-b-D-Xylp-(1-4)-a-L-Rhap-(1-2)-b-D-Fucp-(1-28)+
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<polygalacate>
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b-D-Glcp-(1-3)-b-D-Glcp-(1-3)+
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: 2 |
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Taxons |
- Laminaribiose
Superclasses:
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Residues:
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PDB references: 321 - 5 of 32 PDB entries
PDB ID 7x0n:
Crystal structure of sugar binding protein CbpB complexed wtih laminaribiose from Clostridium thermocellum
Description:
Source: Acetivibrio thermocellus
Experimental method: X-RAY DIFFRACTION
Resolution: 1.68Å
Release date: 2022-09-14
Entry features 1 distinct glycan structures [2 instances].
PDB ID 6xuv:
Crystallographic structure of oligosaccharide dehydrogenase from Pycnoporus cinnabarinus, laminaribiose-bound form
Description: Glucose dehydrogenase (E.C.1.1.5.9)
Source: Trametes cinnabarina
Experimental method: X-RAY DIFFRACTION
Resolution: 1.75Å
Release date: 2021-02-03
Entry features 3 distinct glycan structures [7 instances].
PDB ID 7c6h:
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in an open-liganded state bound to laminaribiose
Description: Sugar ABC transporter, periplasmic sugar-binding protein
Source: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.85Å
Release date: 2020-10-21
Entry features 1 distinct glycan structures [2 instances].
PDB ID 6ry7:
Crystal structure of Dfg5 from Chaetomium thermophilum in complex with laminaribiose
Description: Mannan endo-1,6-alpha-mannosidase (E.C.3.2.1.101)
Source: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Experimental method: X-RAY DIFFRACTION
Resolution: 1.3Å
Release date: 2020-08-12
Entry features 1 distinct glycan structures [1 instances].
PDB ID 6r5u:
The crystal structure of Glycoside Hydrolase BglX inactive mutant from P. aeruginosa in complex with laminaritriose
Description:
Source: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Experimental method: X-RAY DIFFRACTION
Resolution: 2.15Å
Release date: 2020-04-15
Entry features 2 distinct glycan structures [2 instances].
Conformational maps: 1
Map ID: 7342
Disaccharide Fragment: b-D-Glcp-(1-3)-b-D-Glcp
Linkage Path: 3
Method: MD MM3(1996) Tinker 4 HTMD, 1000K, 10ns
Literature references from PDB entries: 141 - 5 of 14 literature references from PDB entries
Reference #22172
Mahasenan KV; Batuecas MT; De Benedetti S; Kim C; Rana N; Lee M; Hesek D; Fisher JF; Sanz-Aparicio J; Hermoso JA; Mobashery S
Catalytic Cycle of Glycoside Hydrolase BglX from and Its Implications for Biofilm Formation.
Published 2020 in ACS Chem Biol, 15: 189-196
Reference #22182
Vogt MS; Schmitz GF; Varón Silva D; Mösch HU; Essen LO
Structural base for the transfer of GPI-anchored glycoproteins into fungal cell walls.
Published 2020 in Proc Natl Acad Sci U S A, 117: 22061-22067
Reference #22063
Chandravanshi M; Samanta R; Kanaujia SP
Conformational Trapping of a β-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
Published 2020 in J Mol Biol, 432: 5711-5734
Reference #20609
Sung KH; Josewski J; Dübel S; Blankenfeldt W; Rau U
Structural insights into antigen recognition of an anti-β-(1,6)-β-(1,3)-D-glucan antibody.
Published 2018 in Sci Rep, 8: 13652
Reference #19470
Nakajima M; Yoshida R; Miyanaga A; Abe K; Takahashi Y; Sugimoto N; Toyoizumi H; Nakai H; Kitaoka M; Taguchi H
Functional and Structural Analysis of a β-Glucosidase Involved in β-1,2-Glucan Metabolism in Listeria innocua.
Published 2016 in PLoS ONE, 11: e0148870
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