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Glycosciences.DB structure entry #22419:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


b-D-Glcp


RES
1b:b-dglc-HEX-1:5


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 </residues>
 <linkages />
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

General Structure Data

Chemical Formula:
Molec. Weight:
# Atoms:
# Residues:	1
# Heavy Atoms:

Superclasses:

Residues:

Residue	Count
B-D-GLCP	1

NMR Proton Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
Monosaccharid		H1	4.640				note
Monosaccharid		H2	3.250				note
Monosaccharid		H3	3.500				note
Monosaccharid		H4	3.420				note
Monosaccharid		H5	3.460				note
Monosaccharid		H6 a	3.720				note
Monosaccharid		H6 b	3.900				note

NMR Carbon Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
Monosaccharid		C1	96.84				note
Monosaccharid		C2	75.20				note
Monosaccharid		C3	76.76				note
Monosaccharid		C4	70.71				note
Monosaccharid		C5	76.76				note
Monosaccharid		C6	61.84				note

PDB references: 334

1 - 5 of 334 PDB entries

PDB ID 8dtc: Crystal Structure of Glucokinase with bound glucose from Acanthamoeba castellanii

Description:

Source: Acanthamoeba castellanii

Experimental method: X-RAY DIFFRACTION

Resolution: 2.25Å

Release date: 2022-08-10

Entry features 1 distinct glycan structures [4 instances].

PDB ID 7mzr: Crystal structure of the UcaD lectin-binding domain in complex with glucose

Description:

Source: Proteus mirabilis

Experimental method: X-RAY DIFFRACTION

Resolution: 1.78Å

Release date: 2022-07-06

Entry features 1 distinct glycan structures [1 instances].

PDB ID 7f71: Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with peptidoglycan sugar moiety and glutamate

Description:

Source: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

Experimental method: X-RAY DIFFRACTION

Resolution: 1.58Å

Release date: 2022-05-11

Entry features 1 distinct glycan structures [1 instances].

PDB ID 7w2s: Crystal structure of TxGH116 E730A mutant from Thermoanaerobacterium xylanolyticum with glucose

Description:

Source: Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)

Experimental method: X-RAY DIFFRACTION

Resolution: 1.85Å

Release date: 2022-04-06

Entry features 1 distinct glycan structures [1 instances].

PDB ID 7w2t: Crystal structure of TxGH116 E730Q mutant from Thermoanaerobacterium xylanolyticum with glucose

Description:

Source: Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)

Experimental method: X-RAY DIFFRACTION

Resolution: 2.15Å

Release date: 2022-04-06

Entry features 1 distinct glycan structures [2 instances].

Literature references: 1

1 - 1 of 1 literature references

Reference #20719

Colombo C; Pitirollo O; Lay L

Recent Advances in the Synthesis of Glycoconjugates for Vaccine Development.

Published 2018 in Molecules, 23: E1712

Reference contains 105 structures

Further literature references from PDB entries: 166

1 - 5 of 166 literature references from PDB entries

Reference #21995

Ahmad N; Dugad S; Chauhan V; Ahmed S; Sharma K; Kachhap S; Zaidi R; Bishai WR; Lamichhane G; Kumar P

Allosteric cooperation in ß-lactam binding to a non-classical transpeptidase.

Published 2022 in Elife, 11:

Reference #21380

Chang L; Campbell J; Raji IO; Guduru SKR; Kandel P; Nguyen M; Liu S; Tran K; Venugopal NK; Taylor BC; Holt MV; Young NL; Samuel ELG; Jain P; Santini C; Sankaran B; MacKenzie KR; Young DW

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery.

Published 2021 in Sci Rep, 11: 1121

Reference #22175

Fujdiarová E; Houser J; Dobeš P; Paulíková G; Kondakov N; Kononov L; Hyršl P; Wimmerová M

Heptabladed β-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system.

Published 2021 in FEBS J, 288: 1343-1365

Reference #21373

Peter MF; Gebhardt C; Glaenzer J; Schneberger N; de Boer M; Thomas GH; Cordes T; Hagelueken G

Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates.

Published 2020 in J Mol Biol, 433: 166756

Reference #22172

Mahasenan KV; Batuecas MT; De Benedetti S; Kim C; Rana N; Lee M; Hesek D; Fisher JF; Sanz-Aparicio J; Hermoso JA; Mobashery S

Catalytic Cycle of Glycoside Hydrolase BglX from and Its Implications for Biofilm Formation.

Published 2020 in ACS Chem Biol, 15: 189-196

Consortium for Functional Glycomics (CFG):

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