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Glycosciences.DB structure entry #22419:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


b-D-Glcp


RES
1b:b-dglc-HEX-1:5


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 </residues>
 <linkages />
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

General Structure Data

Chemical Formula:
Molec. Weight:
# Atoms:
# Residues:	1
# Heavy Atoms:

Superclasses:

Residues:

Residue	Count
B-D-GLCP	1

NMR Proton Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
Monosaccharid		H1	4.640				note
Monosaccharid		H2	3.250				note
Monosaccharid		H3	3.500				note
Monosaccharid		H4	3.420				note
Monosaccharid		H5	3.460				note
Monosaccharid		H6 a	3.720				note
Monosaccharid		H6 b	3.900				note

NMR Carbon Chemical Shift Info

MHz	0
Temperature	70
Solvent	D2O
Residue	Linkage	Carbon	PPM	JFrom	JTo	Hz	Note
Monosaccharid		C1	96.84				note
Monosaccharid		C2	75.20				note
Monosaccharid		C3	76.76				note
Monosaccharid		C4	70.71				note
Monosaccharid		C5	76.76				note
Monosaccharid		C6	61.84				note

PDB references: 341

1 - 5 of 341 PDB entries

PDB ID 7wdo: Crystal structures of MeBglD2 in complex with various saccharides

Description:

Source: metagenome

Experimental method: X-RAY DIFFRACTION

Resolution: 2.21Å

Release date: 2022-11-02

Entry features 2 distinct glycan structures [2 instances].

PDB ID 7wdv: Crystal structures of MeBglD2 in complex with various saccharides

Description:

Source: metagenome

Experimental method: X-RAY DIFFRACTION

Resolution: 1.812Å

Release date: 2022-11-02

Entry features 2 distinct glycan structures [2 instances].

PDB ID 8e0s: DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase complexed with DAHP Oxime in unbound:(bound)2:unbound conformations

Description:

Source: Escherichia coli K-12

Experimental method: X-RAY DIFFRACTION

Resolution: 1.65Å

Release date: 2022-10-12

Entry features 2 distinct glycan structures [2 instances].

PDB ID 7x0h: Crystal structure of sugar binding protein CbpA complexed wtih glucose from Clostridium thermocellum

Description:

Source: Acetivibrio thermocellus

Experimental method: X-RAY DIFFRACTION

Resolution: 1.85Å

Release date: 2022-09-14

Entry features 1 distinct glycan structures [4 instances].

PDB ID 7vt6: Crystal structure of CBM deleted MtGlu5 in complex with BGC.

Description:

Source: Meiothermus taiwanensis WR-220

Experimental method: X-RAY DIFFRACTION

Resolution: 1.53Å

Release date: 2022-09-07

Entry features 1 distinct glycan structures [1 instances].

Literature references: 2

1 - 2 of 2 literature references

Reference #22566

Temme JS; Crainic JA; Walker LM; Yang W; Tan Z; Huang X; Gildersleeve JC

Microarray-guided evaluation of the frequency, B-cell origins, and selectivity of human glycan-binding antibodies reveals new insights and novel antibodies.

Published 2022 in J Biol Chem, 298: 102468

Reference contains 38 structures

Reference #20719

Colombo C; Pitirollo O; Lay L

Recent Advances in the Synthesis of Glycoconjugates for Vaccine Development.

Published 2018 in Molecules, 23: E1712

Reference contains 105 structures

Further literature references from PDB entries: 169

1 - 5 of 169 literature references from PDB entries

Reference #22477

Ye TJ; Huang KF; Ko TP; Wu SH

Synergic action of an inserted carbohydrate-binding module in a glycoside hydrolase family 5 endoglucanase.

Published 2022 in Acta Crystallogr D Struct Biol, 78: 633-646

Reference #21995

Ahmad N; Dugad S; Chauhan V; Ahmed S; Sharma K; Kachhap S; Zaidi R; Bishai WR; Lamichhane G; Kumar P

Allosteric cooperation in ß-lactam binding to a non-classical transpeptidase.

Published 2022 in Elife, 11:

Reference #22518

Balachandran N; Grainger RA; Rob T; Liuni P; Wilson DJ; Junop MS; Berti PJ

Role of Half-of-Sites Reactivity and Inter-Subunit Communications in DAHP Synthase Catalysis and Regulation.

Published 2022 in Biochemistry, :

Reference #21380

Chang L; Campbell J; Raji IO; Guduru SKR; Kandel P; Nguyen M; Liu S; Tran K; Venugopal NK; Taylor BC; Holt MV; Young NL; Samuel ELG; Jain P; Santini C; Sankaran B; MacKenzie KR; Young DW

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery.

Published 2021 in Sci Rep, 11: 1121

Reference #22175

Fujdiarová E; Houser J; Dobeš P; Paulíková G; Kondakov N; Kononov L; Hyršl P; Wimmerová M

Heptabladed β-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system.

Published 2021 in FEBS J, 288: 1343-1365

Consortium for Functional Glycomics (CFG):

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