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Glycosciences.DB structure entry #2026:
a-L-Fucp-(1-6)+
|
a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-4)-Asn
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
[][ASN]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-GLCPNAC]{[(4+1)][B-D-MANP]{[(3+1)][A-D-MANP]{}[(6+1)][A-D-MANP]{}}}[(6+1)][A-L-FUCP]{}}}
<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
<residues>
<basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="2" name="n-acetyl" />
<basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
<stemtype id="1" type="dglc" />
</basetype>
<substituent id="4" name="n-acetyl" />
<basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
<stemtype id="1" type="dman" />
</basetype>
<basetype id="8" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
<stemtype id="1" type="lgal" />
<modification type="d" pos_one="6" />
</basetype>
</residues>
<linkages>
<connection id="1" parent="1" child="2">
<linkage id="1" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="2" parent="1" child="3">
<linkage id="2" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="3" parent="3" child="4">
<linkage id="3" parentType="d" childType="n">
<parent pos="2" />
<child pos="1" />
</linkage>
</connection>
<connection id="4" parent="3" child="5">
<linkage id="4" parentType="o" childType="d">
<parent pos="4" />
<child pos="1" />
</linkage>
</connection>
<connection id="5" parent="5" child="6">
<linkage id="5" parentType="o" childType="d">
<parent pos="3" />
<child pos="1" />
</linkage>
</connection>
<connection id="6" parent="5" child="7">
<linkage id="6" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
<connection id="7" parent="1" child="8">
<linkage id="7" parentType="o" childType="d">
<parent pos="6" />
<child pos="1" />
</linkage>
</connection>
</linkages>
<aglyca>
<historicalData>
<entry id="0" name="ASN" toResidue="1">
<linkage parentType="n" childType="x">
<parent pos="4" />
<child pos="1" />
</linkage>
</entry>
</historicalData>
</aglyca>
</sugar>
3D Structure Model1 - 4 of 4 entries with matching glycan part
Structure entry #3411:
a-L-Fucp-(1-6)+
|
a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-4)-Asn-(2-1)-Acetate
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
 |
 |
 |
 : 1 |
 |
Taxons |
Structure entry #5710:
a-L-Fucp-(1-6)+
|
a-D-Manp-(1-6)+ b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one>
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
|
a-D-Manp-(1-3)+
|
|
|
: 1 |
|
Taxons |
Structure entry #23271:
a-D-Manp-(1-6)+ a-L-Fucp-(1-6)+
| |
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
|
a-D-Manp-(1-3)+
 |
|
 : 1 |
: 9 |
|
Taxons |
Structure entry #29471:
a-D-Manp-(1-6)+
|
b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
| |
a-D-Manp-(1-3)+ b-D-GlcpNAc-(1-4)-Asn
|
a-L-Fucp-(1-3/6)+
|
|
|
: 1 |
|
Taxons |
- N-glycan core (Show) (Search Database)
| Chemical Formula: | C44H74N4O31 | #C | #H | #O | #N | |
| Molec. Weight: | 1154 | 44 | 74 | 31 | 4 | |
| # Atoms: | 153 | |||||
| # Residues: | 7 | |||||
| # Heavy Atoms: | 79 | |||||
Superclasses:
|
Residues:
|
||||||||||||||||||||
PDB references: 941 - 5 of 94 PDB entries
PDB ID 7x8w:
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab354
Description:
Source: Severe acute respiratory syndrome coronavirus 2, HOMO SAPIENS
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-12-07
Entry features 2 distinct glycan structures [2 instances].
PDB ID 7uot:
Native Lassa glycoprotein in complex with neutralizing antibodies 8.9F and 37.2D
Description:
Source: Lassa virus, Homo sapiens
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-11-02
Entry features 8 distinct glycan structures [33 instances].
PDB ID 7uov:
Native Lassa glycoprotein in complex with neutralizing antibodies 12.1F and 37.2D
Description:
Source: Homo sapiens, Lassa virus
Experimental method: ELECTRON MICROSCOPY
Release date: 2022-11-02
Entry features 7 distinct glycan structures [33 instances].
PDB ID 7qzr:
Structure of native leukocyte myeloperoxidase in complex with the Staphyloccal Peroxidase Inhibitor SPIN from Staphylococcus aureus
Description:
Source: Homo sapiens, Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.18Å
Release date: 2022-10-26
Entry features 2 distinct glycan structures [6 instances].
PDB ID 7z53:
Structure of native leukocyte myeloperoxidase in complex with a truncated version (SPIN truncated) of the Staphyloccal Peroxidase Inhibitor SPIN from Staphylococcus aureus
Description:
Source: Homo sapiens, Staphylococcus aureus
Experimental method: X-RAY DIFFRACTION
Resolution: 2.28Å
Release date: 2022-10-26
Entry features 7 distinct glycan structures [26 instances].
Literature references: 271 - 5 of 27 literature references
Reference #21945
Ugonotti J; Kawahara R; Loke I; Zhu Y; Chatterjee S; Tjondro HC; Sumer-Bayraktar Z; Neelamegham S; Thaysen-Andersen M
N-acetyl-β-D-hexosaminidases mediate the generation of paucimannosidic proteins via a putative noncanonical truncation pathway in human neutrophils.
Published 2022 in Glycobiology, 32: 218-229
Reference contains 8 structures
Reference #21726
Tjondro HC; Ugonotti J; Kawahara R; Chatterjee S; Loke I; Chen S; Soltermann F; Hinneburg H; Parker BL; Venkatakrishnan V; Dieckmann R; Grant OC; Bylund J; Rodger A; Woods RJ; Karlsson-Bengtsson A; Struwe WB; Thaysen-Andersen M
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.
Published 2021 in J Biol Chem, 296: 100144
Reference contains 20 structures
Reference #21760
Matthies I; Abrahams JL; Jensen P; Oliveira T; Kolarich D; Larsen MR
N-Glycosylation in isolated rat nerve terminals.
Published 2021 in Mol Omics, 17: 517-532
Reference contains 26 structures
Reference #21026
Paschinger K; Yan S; Wilson IBH
N-glycomic Complexity in Anatomical Simplicity: Caenorhabditis elegans as a Non-model Nematode?
Published 2019 in Front Mol Biosci, 6: 9
Reference contains 28 structures
Reference #21127
Hochscherf J; Pietsch M; Tieu W; Kuan K; Abell AD; Gütschow M; Niefind K
Crystal structure of highly glycosylated human leukocyte elastase in complex with an S2' site binding inhibitor.
Published 2018 in Acta Crystallogr F Struct Biol Commun, 74: 480-489
Reference contains 3 structures
1 - 5 of 39 literature references from PDB entries
Reference #22572
Takeshita M; Fukuyama H; Kamada K; Matsumoto T; Makino-Okamura C; Uchikubo-Kamo T; Tomabechi Y; Hanada K; Moriyama S; Takahashi Y; Ishigaki H; Nakayama M; Nguyen CT; Kitagawa Y; Itoh Y; Imai M; Maemura T; Furusawa Y; Ueki H; Iwatsuki-Horimoto K; Ito M; Y
Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Published 2022 in iScience, : 105596
Reference #21953
Kanai R; Cornelius F; Vilsen B; Toyoshima C
Cryoelectron microscopy of Na,K-ATPase in the two E2P states with and without cardiotonic steroids.
Published 2022 in Proc Natl Acad Sci U S A, 119: e2123226119
Reference #22530
Leitgeb U; Furtmüller PG; Hofbauer S; Brito JA; Obinger C; Pfanzagl V
The staphylococcal inhibitory protein SPIN binds to human myeloperoxidase with picomolar affinity but only dampens halide oxidation.
Published 2022 in J Biol Chem, : 102514
Reference #22537
Li H; Buck T; Zandonatti M; Yin J; Moon-Walker A; Fang J; Koval A; Heinrich ML; Rowland MM; Diaz Avalos R; Schendel SL; Parekh D; Zyla D; Enriquez A; Harkins S; Sullivan B; Smith V; Chukwudozie O; Watanabe R; Robinson JE; Garry RF; Branco LM; Hastie KM;
A cocktail of protective antibodies subverts the dense glycan shield of Lassa virus.
Published 2022 in Sci Transl Med, 14: eabq0991
Reference #22310
Kanai R; Cornelius F; Vilsen B; Toyoshima C
Cryo-electron microscopy of Na ,K -ATPase reveals how the extracellular gate locks in the E2·2K state.
Published 2022 in FEBS Lett, :
| NCBI Taxonomy ID | Scientific Name |
| 6239 | Caenorhabditis elegans |
| 10029 | Cricetulus griseus |
| 9031 | Gallus gallus |
| 9606 | Homo sapiens |
Consortium for Functional Glycomics (CFG):
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