Glycosciences.de - Glycosciences.DB entry 1517

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Glycosciences.DB structure entry #1517: N-Glycan core structure linked to Asn


 a-D-Manp-(1-6)+
               |
          b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn
               |
 a-D-Manp-(1-3)+


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="7" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="5" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 <aglyca>
 <historicalData>
 <entry id="0" name="ASN" toResidue="1">
 <linkage parentType="n" childType="x">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </entry>
 </historicalData>
 </aglyca>
 </sugar>

download coordinates

Corresponding entries: 9

1 - 5 of 9 entries with matching glycan part

Structure entry #972:

a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)-Asn-(2-1)-Dansyl | a-D-Manp-(1-3)+

: 1

Taxons

Structure entry #5706:

a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-7)-<7-amino-4-methyl-2h-1-benzopyran-2-one> | a-D-Manp-(1-3)+

: 1

Taxons

Structure entry #7456: N-Glycan core structure

a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc | a-D-Manp-(1-3)+

: 3

: 12

Taxons: 1

Structure entry #14575:

a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)+ | | a-D-Manp-(1-3)+ Asn-(1-2)-Cys-(1-2)-Ser | Leu-(1-2)-Ala-(1-2)+

: 1

Taxons: 1

Structure entry #14578:

a-D-Manp-(1-6)+ | b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-4)+ | | a-D-Manp-(1-3)+ Asn-(1-2)-Arg-(1-2)-Thr | Val-(1-2)-Gly-(1-2)-Glu-(1-2)+

N-glycan core (Show) (Search Database)

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Trivial names

N-glycan core

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General Structure Data

Chemical Formula:	C₃₈H₆₄N₄O₂₇	#C	#H	#O	#N
Molec. Weight:	1008	38	64	27	4
# Atoms:	133
# Residues:	6
# Heavy Atoms:	69

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Composition

Superclasses:

Hex
Hex	3
HexNAc	2

Residues:

Residue	Count
A-D-MANP	2
ASN	1
B-D-GLCPNAC	2
B-D-MANP	1

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NMR Proton Chemical Shift Info

MHz	400
Temperature	300
Solvent	D2O
Residue	Linkage	Proton	PPM	JFrom	JTo	Hz	Note
b-D-GlcpNAc	4	H1	5.047			0
b-D-GlcpNAc	4	NAC	2.008			0
b-D-GlcpNAc	4,4	H1	4.612			0
b-D-GlcpNAc	4,4	NAC	2.073			0
b-D-Manp	4,4,4	H1	4.779			0
b-D-Manp	4,4,4	H2	4.252			0
a-D-Manp	6,4,4,4	H1	4.913			0
a-D-Manp	6,4,4,4	H2	3.970			0
a-D-Manp	3,4,4,4	H1	5.099			0
a-D-Manp	3,4,4,4	H2	4.065			0