Glycosciences.de - Glycosciences.DB entry 1298

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Glycosciences.DB structure entry #1298:

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Format: CarbBank LINUCS GlycoCT_condensed GlycoCT_xml


                                     a-L-Fucp-(1-6)+
                                                   |
          a-D-Manp-(1-6)+                       D-GlcNAc
                        |                          |
 b-D-GlcpNAc-(1-4)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)+
                        |
          a-D-Manp-(1-3)+


RES
1b:x-dglc-HEX-x:x
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-dman-HEX-1:5
10b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:5o(4+1)7d
7:7d(2+1)8n
8:5o(6+1)9d
9:1o(6+1)10d


<?xml version="1.0" encoding="UTF-8"?>
 <sugar version="1.0">
 <residues>
 <basetype id="1" anomer="x" superclass="hex" ringStart="-1" ringEnd="-1" name="x-dglc-HEX-x:x">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="2" name="n-acetyl" />
 <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="4" name="n-acetyl" />
 <basetype id="5" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="6" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="7" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dglc-HEX-1:5">
 <stemtype id="1" type="dglc" />
 </basetype>
 <substituent id="8" name="n-acetyl" />
 <basetype id="9" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dman-HEX-1:5">
 <stemtype id="1" type="dman" />
 </basetype>
 <basetype id="10" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-lgal-HEX-1:5|6:d">
 <stemtype id="1" type="lgal" />
 <modification type="d" pos_one="6" />
 </basetype>
 </residues>
 <linkages>
 <connection id="1" parent="1" child="2">
 <linkage id="1" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="2" parent="1" child="3">
 <linkage id="2" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="3" parent="3" child="4">
 <linkage id="3" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="4" parent="3" child="5">
 <linkage id="4" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="5" parent="5" child="6">
 <linkage id="5" parentType="o" childType="d">
 <parent pos="3" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="6" parent="5" child="7">
 <linkage id="6" parentType="o" childType="d">
 <parent pos="4" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="7" parent="7" child="8">
 <linkage id="7" parentType="d" childType="n">
 <parent pos="2" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="8" parent="5" child="9">
 <linkage id="8" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 <connection id="9" parent="1" child="10">
 <linkage id="9" parentType="o" childType="d">
 <parent pos="6" />
 <child pos="1" />
 </linkage>
 </connection>
 </linkages>
 </sugar>

SNFG-style Graphics

3D Structure Model

download coordinates

General Structure Data

Chemical Formula:	C₄₈H₈₁N₃O₃₅		#C	#H	#O	#N
Molec. Weight:	1259		48	81	35	3
# Atoms:	167
# Residues:	7
# Heavy Atoms:	86

Superclasses:

Hex
Hex	3
dHex	1
HexNAc	3

Residues:

Residue	Count
A-D-MANP	2
A-L-FUCP	1
B-D-GLCPNAC	2
B-D-MANP	1
D-GLCNAC	1

Literature references: 4

1 - 4 of 4 literature references

Reference #7612

Fukushima K; Ohkura T; Kanai M; Kuroki M; Matsuoka Y; Kobata A; Yamashita K

Carbohydrate structures of a normal counterpart of the carcinoembryonic antigen produced by colon epithelial cells of normal adults

Published 1995 in Glycobiology, 5: 105-115

Reference contains 6 structures

Reference #1707

Endo T; Kasahara M; Kobata A

Structures of the asparagine-linked sugar chain of glucose transporter from human erythrocytes

Published 1990 in Biochemistry, 29: 9126-9134

Reference contains 8 structures

Reference #4336

Yamazaki F; Sato S; Nukada T; Ito Y; Ogawa T

Synthetic studies on cell-surface glycans. 68. Synthesis of .alpha.-D-Manp-(1-3)-[.beta.-D-GlcpNAc-(1-4)]-[.alpha. -D-Manp-(1-6)]-.beta.-D-Manp-(1-4)-.beta.-D-GlcpNAc-(1-4)-[.alpha.-L-Fucp-(1-6)]-D-GlcpNAc, a core glycoheptaose of a 'bisected' complex-ty

Published 1990 in Carbohydr Res, 201: 31-50

Reference contains 1 structure

Tomiya N; Kurono M; Ishihara H; Tejima S; Endo S; Arata Y; Takahashi N

Structural analysis of N-linked oligosaccharides by a combination of glycopeptidase, exoglycosidases, and high-performance liquid chromatography

Published 1987 in Anal Biochem, 163: 489-499

Reference contains 49 structures

NCBI Taxonomy ID	Scientific Name
9606	Homo sapiens

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